hypedsearch documentation

Documentation and examples for how the modules work for this project. Docs are built with sphinx and hosted via read the docs.

Getting Started:

• Background
  • What are proteins and peptides?
  • What is mass spec?
  • What does mass spec data look like?
  • How do we create an alignment?
• Motivation
• Installation and Usage
  • Installation
  • Usage
• docs
  • Tools
  • Building
  • Updating

Modules:

• alignment
  • alignment_utils
  • alignment
  • hybrid_alignment
• database
• gen_spectra
• identification
• objects
• postprocessing
• preprocessing
  • spectra_filtering
  • merge_search
  • preprocessing_utils
• scoring
  • mass_comparisons
  • scoring
• utils

Indices and tables

• Index

• Search Page