hypedsearch documentation
=======================================

Documentation and examples for how the modules work for this project. 
Docs are built with sphinx and hosted via read the docs.

.. toctree::
   :maxdepth: 2
   :caption: Getting Started:

   Background
   Motivation
   Installation and Usage
   docs

.. toctree::
   :maxdepth: 2
   :caption: Modules:

   alignment
   database
   gen_spectra
   identification
   objects
   postprocessing
   preprocessing
   scoring
   utils

Indices and tables
==================

* :ref:`genindex`
* :ref:`search`

.. * :ref:`modindex`