utils
=====

.. py:module::src.utils

Utils module is used throughout the project for various things. 
If you don't know where to put something, it probably belongs here.



.. autofunction:: src.utils.file_exists

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.. autofunction:: src.utils.make_valid_dir_string

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.. autofunction:: src.utils.make_dir

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.. autofunction:: src.utils.make_valid_text_file

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.. autofunction:: src.utils.make_valid_json_file

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.. autofunction:: src.utils.make_valid_csv_file

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.. autofunction:: src.utils.make_valid_fasta_file

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.. autofunction:: src.utils.is_json

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.. autofunction:: src.utils.is_fasta

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.. autofunction:: src.utils.is_dir

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.. autofunction:: src.utils.is_file

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.. autofunction:: src.utils.all_perms_of_s

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.. autofunction:: src.utils.ppm_to_da

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.. autofunction:: src.utils.make_sparse_array

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.. autofunction:: src.utils.overlap_intervals

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.. autofunction:: src.utils.predicted_len

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.. autofunction:: src.utils.predicted_len_precursor

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.. autofunction:: src.utils.hashable_boundaries

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.. autofunction:: src.utils.cosine_similarity

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.. autofunction:: src.utils.__split_hybrid

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.. autofunction:: src.utils.DEV_contains_truth_parts

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.. autofunction:: src.utils.DEV_contains_truth_exact